For the most up-to-date list, see my page on Google Scholar.
2022
Draghi JA & Ogbunugafor, C. B. (2022). Exploring the expanse between theoretical questions and experimental approaches in the modern study of evolvability. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution.
2021
Bruger EL, Chubiz LM, Rojas Echenique JI, Renshaw CJ, Espericueta NV, Draghi JA, & Marx CJ (2021). Genetic context significantly influences the maintenance and evolution of degenerate pathways. Genome biology and evolution, 13(6), evab082.
Draghi, J. A. (2021). Asymmetric evolvability leads to specialization without trade-offs. The American Naturalist, 197(6), 644-657.
Svensson, E. I., Arnold, S. J., Bürger, R., Csilléry, K., Draghi, J., Henshaw, J. M., … & Runemark, A. Correlational selection in the age of genomics. Nature ecology & evolution 5, no. 5 (2021): 562-573.
Bruger, E. L., Chubiz, L. M., Rojas Echenique, J. I., Renshaw, C. J., Espericueta, N. V., Draghi, J. A., & Marx, C. J. (2021). Genetic context significantly influences the maintenance and evolution of degenerate pathways. Genome biology and evolution, 13(6), evab082.
Teufel, A. I., Liu, W., Draghi, J. A., Cameron, C. E., & Wilke, C. O. (2021). Modeling poliovirus replication dynamics from live time-lapse single-cell imaging data. Scientific reports, 11(1), 1-15.
2020
Bono, L. M., Draghi, J. A., & Turner, P. E. (2020). Evolvability costs of niche expansion. Trends in Genetics, 36(1), 14-23.
Matthey‐Doret, R., Draghi, J. A., & Whitlock, M. C. (2020). Plasticity via feedback reduces the cost of developmental instability. Evolution Letters, 4(6), 570-580.
2019
Ho, V., Herman-Bausier, P., Shaw, C., Conrad, K. A., Garcia-Sherman, M. C., Draghi, J., … & Rauceo, J. M. (2019). An Amyloid Core Sequence in the Major Candida albicans Adhesin Als1p Mediates Cell-Cell Adhesion. mBio, 10(5), e01766-19. [pdf]
Draghi, J. (2019). Phenotypic variability can promote the evolution of adaptive plasticity by reducing the stringency of natural selection. Journal of evolutionary biology. [pdf]
Draghi, J. (2019). Developmental noise and ecological opportunity across space can release constraints on the evolution of plasticity. Evolution & development, e12305. [pdf]
Zhao, L., Seth-Pasricha, M., Stemate, D., Crespo-Bellido, A., Gagnon, J., Draghi, J., & Duffy, S. (2019). Existing host range mutations constrain further emergence of RNA viruses. Journal of virology, 93(4), e01385-18. [pdf]
Draghi, J. (2019). Links between evolutionary processes and phenotypic robustness in microbes. In Seminars in cell & developmental biology (Vol. 88, pp. 46-53). Academic Press. [pdf]
2018-2015
Gilbert, K. J., Sharp, N. P., Angert, A. L., Conte, G. L., Draghi, J. A., Guillaume, F., Hargreaves, A. L., Matthey-Doret, R. & Whitlock, M. C. (2017) Local adaptation interacts with expansion load during range expansion: maladaptation reduces expansion load. The American Naturalist 189, no. 4 : 368-380. [pdf]
Draghi, J., & Whitlock, M. (2015). Robustness to noise in gene expression evolves despite epistatic constraints in a model of gene networks. Evolution, 69(9), 2345-2358. [pdf]
Draghi, J., & Whitlock, M. C. (2015). Overdominance interacts with linkage to determine the rate of adaptation to a new optimum. Journal of evolutionary biology, 28(1), 95-104. [pdf]
Schulte, M. B., Draghi, J. A., Plotkin, J. B., & Andino, R. (2015). Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses. Elife, 4, e03753. [pdf]
2011-2014
Chou, H. H., Delaney, N. F., Draghi, J. A., & Marx, C. J. (2014). Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations. PLoS genetics, 10(2), e1004149. [pdf]
Draghi, J. A., & Plotkin, J. B. (2013). Selection biases the prevalence and type of epistasis along adaptive trajectories. Evolution, 67(11), 3120-3131. [pdf]
Draghi, J. A., & Whitlock, M. C. (2012). Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation. Evolution, 66(9), 2891-2902. [pdf]
Turner, P. E., Draghi, J. A., & Wilpiszeski, R. (2012). High-throughput analysis of growth differences among phage strains. Journal of microbiological methods, 88(1), 117-121. [pdf]
Draghi, J. A., Parsons, T. L., & Plotkin, J. B. (2011). Epistasis increases the rate of conditionally neutral substitution in an adapting population. Genetics, 187(4), 1139-1152. [pdf]
Kryazhimskiy, S., Draghi, J. A., & Plotkin, J. B. (2011). In evolution, the sum is less than its parts. science, 332(6034), 1160-1161. [pdf]
Draghi, J. A., & Plotkin, J. B. (2011). Molecular evolution: Hidden diversity sparks adaptation. Nature, 474(7349), 45. [pdf]
2006-2010
Draghi, J. A., Parsons, T. L., Wagner, G. P., & Plotkin, J. B. (2010). Mutational robustness can facilitate adaptation. Nature, 463(7279), 353. [pdf]
Draghi, J., & Wagner, G. P. (2009). The evolutionary dynamics of evolvability in a gene network model. Journal of evolutionary biology, 22(3), 599-611. [pdf]
Draghi, J., & Wagner, G. P. (2008). Evolution of evolvability in a developmental model. Evolution: International Journal of Organic Evolution, 62(2), 301-315. [pdf]
Draghi, J. A., & Turner, P. E. (2006). DNA secretion and gene-level selection in bacteria. Microbiology, 152(9), 2683-2688. [pdf]